Tag
Global Alignment Algorithms
Global alignment algorithm used by globalAlignment.
Functions
Computes the best global alignment of the two sequences. |
Values
Dynamic programming algorithm for alignments by Needleman and Wunsch. | |
Gotoh's affine gap cost alignment algorithm. | |
Myers' bit vector alignment algorithm for edit distance.
Note that this algorithm does not returns the alignment itself, but only computes the score. | |
Myers' bit vector algorithm for edit distance combined with Hirschberg's linear space alignment algorithm. | |
Hirschberg's linear space global alignment algorithm. | |
Multiple sequence alignment for protein sequences. | |
Multiple sequence alignment for protein sequences with custom matrix and gap penalties. | |
Multiple sequence alignment for nucleotide sequences. | |
Multiple sequence alignment for genomic, closely related sequences. |
SeqAn - Sequence Analysis Library - www.seqan.de